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The invention of an automated method for water sampling was explicitly created for detecting waterborne infections like Giardia and Cryptosporidium. It includes electromechanical sampling equipment that gathers water samples from diverse sources at predefined times. After collecting the samples, filtering and backwashing procedures are used to concentrate pathogens in small volumes of concentrate prepared for IMS and microscopy detection methods. Both laboratory-spiked and field-collected samples can be used in validation trials to show the system's dependability and efficiency. Intending to improve public health surveillance and prevent the spread of waterborne disease, this automated water sampling system offers a viable option for the quick, accurate, and timely identification of Giardia and Cryptosporidium in water samples.